PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29709.m001171
Common NameRCOM_0658180
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 185aa    MW: 20927.9 Da    PI: 5.293
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29709.m001171genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.52e-11131156126
                    ---SS-EEEEEEE--TT-SS-EEEEE CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYr 26 
                    ldDgy+WrKYGqK+vk+s +p  Y +
  29709.m001171 131 LDDGYKWRKYGQKVVKNSLHPSVYCK 156
                    59*******************99977 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-13116157IPR003657WRKY domain
SuperFamilySSF1182901.44E-10123156IPR003657WRKY domain
PROSITE profilePS5081112.805126163IPR003657WRKY domain
SMARTSM007742.1E-4131181IPR003657WRKY domain
PfamPF031069.3E-8132157IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEGGEREVPN YELQVSFSTP QAIHEMGFVQ FEENQVLSFL APSHSQQSSQ ISQPLNTTTT  60
TTQIGFSTHN DQVGNLDPKA TNEDTCTASA NDGNNSWWRS SSSSEKNKVK VRRRLREPRF  120
CFQTRSDVDV LDDGYKWRKY GQKVVKNSLH PSVYCKVNAE LSEIPSPEHE VSFLFENSEN  180
SNAFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115KVRRRLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579263.13e-89PREDICTED: probable WRKY transcription factor 12
SwissprotQ93WY41e-42WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBLB9SKK61e-137B9SKK6_RICCO; Transcription factor, putative
STRINGPOPTR_0014s04890.11e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72943245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.15e-27WRKY family protein